1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttgtgatgtatctgtctatttgtttggcatatattgtcatattgtgtaatgttcatttaggactttatctaatctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC
species | Glycine max |
transcript | GLYMA17G12750.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACT GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCEST: gi|58025010|gb|CX711751.1|CX711751
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
EST: GACTTTTTGTGGCAAAGGATGTTTTCC-TGTTTTTCTGGCAGTACAAACT GTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
genomic: GACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTTGCAGTACAAACTgtgagcattc ... atttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCC
tgtgtaatgttcatttaggactttatctaatctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC
atctaat putative branch site (score: 3)
tttttcc putative PPT
ttctattgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtgatgtatctgtctatttgtttggcatatattgtcatattgtgtaatgttcatttaggactttatctaatctatgttctattgaatttttccagGTGATTGCAGCTATTGGTGGCTTTGCATACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGTTGGGATAGGATACTGTCAAGGCATC
- - - tgatgta
- - - - - - - ctgtcta
- - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - -gcatata