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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatactttgatgttggtcttgacgcataatttcaactgatagtataacttgttgagatcaaatgataatttggtgaactttttggtgcttcatag

Basic information

species Glycine max
transcript GLYMA17G12750.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 5'ss of exon 4
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgt--gtatactttgatgttggtcttgacgcataatttcaactgata-------gtataacttgttga-----gatcaaatgata-atttggtgaactt--tttggtgcttcatag----------------------
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||   |||| ||||  ||  | |||       || |  ||| ||||        ||| || || ||||     |||    | ||| || |  |||| ||  |||  |    |||                        
ATGATGAATTGATATCTCCATGCATGTGCAAAGGCACCCAACAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGTTCAGTGAAGgcaagtattctttcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttatagatctaatgaagttgctttattttcccattcaacggttctttgtcctttacag

upper sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ14522 (Selaginella moellendorffii), 5'ss of exon 2
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatactttgatgttggtcttgacgcataatttcaactgatagtataacttgttgag-atcaaatgataatttggtgaactttttggtgcttcatag
  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||||    ||| |        || |  | |||  ||||              ||| || |  | | ||||| |     |||   || || ||  |||  ||
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactct--------tcctagcacattttttc--------------cttcttaaacaccgaatgaaa---cagtggttttctttgtttttcgcag

upper sequence: GLYMA17G12750.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ26224 (Selaginella moellendorffii), 5'ss of exon 2
AGGATGAATTGATATCTCCGTGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatactttgatgttggtcttgacgcataatttcaactgatagtataacttgttgagatcaaatgataatttggtgaactttttggtgcttcatag
  ||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || |||||    ||| |        || |  | |||  |||   ||  ||  | | |        || |||   |  |||  |    |||| |  |        
GCGATGAATTGATCTCTCCTTGTATGTGCAAGGGGACTCAACAGTTCGTCCATCGATCATGCCTCGATCACTGGCGCTCGGTCAAGgtaagaactct--------tcctagcacat--ttttttcttctaaaacacc------gaatgaaacagtggttttctttgtttttcgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409807|gb|EV279615.1|EV279615
EST:     CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG                         GAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
genomic: CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatactt ... tgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT