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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGgtgtgtatattccaaatcctcttgttctttgtttattccaaatcaacatgtattctgaatgatgcatactgattttccatcttgctaatttatgcaacctttttgtgtcgtcttttttggggactgttttgcag

Basic information

species Glycine max
transcript GLYMA17G12670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04860.t01 (Vitis vinifera), 5'ss of exon 3
GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGgtgtgtatattccaaatcctcttgttctttgtttattccaaatcaacatgtattctgaatgatgcatactgattttccatcttgctaatttatgcaacctttttgtgtcgtcttttttggggactgttttgcag
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GTGCTTTATGCAGTTGTTTGCTTCCAGAAAGTCTTCAAGTAACCACTGTTAAACAGCTGCCCGAGTACCACAATTGTTCAGgta-gtagtttttttctcaaatccttctctttttagt----atcctaatctatttgtgactgtaaata---gctgcacaact-gttaacatttgcaaccttttcctcttga-ttttgtggcatataacatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330241|gb|FK019836.1|FK019836
EST:     TCTTCAAGTAACAAGTGTTAAACAGCTGCCTGAATACCATGAATGCTCGG                         AAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAG
genomic: TCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGGgtgtgtatat ... tgttttgcagAAGATGAATTTGTTGAATCTCTTTCACCTGCCACACCCCGTGAGTCAACAG