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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTTATAACTAAGAACTGCAATCATTTTACAGACGATCTCTCTTATAGATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccgtacaaggaaattctcttataagctcatcttttacaccttgatgtatctgtttagttccatatttttcttctgtattcataatattaatta...

Basic information

species Glycine max
transcript GLYMA17G12670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602598|gb|DB968880.1|DB968880
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAG                         GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGT
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGT
EST: gi|19348215|gb|BM892747.1|BM892747
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAG                         GTGCTTTGTGCA
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCA
EST: gi|192330241|gb|FK019836.1|FK019836
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGTTAG                         GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA
EST: gi|151402056|gb|EV271869.1|EV271869
EST:     ATTGACTGGGAAACAAATCCCAGGT-GGGTGAATCGGCTTGCTAAGCTAG                         -TGCTTTGTGCAGCTGTCTACTTCCTGAA-GTCTTCA-GTA-CA-GTGT-A
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA