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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtcatatcctccctattcgtgtgaaatatgcaggcgtaattgtcataaaaatacaatgagcataatcctaagttcagccttttggtcaaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGG

Basic information

species Glycine max
transcript GLYMA17G12670.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12670.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04860.t01 (Vitis vinifera), 3'ss of exon 2
-tttgtcatatcctccctattcgtgtgaaatatgcaggcg--taattgtcataaaaatacaatgagcataatcctaagttcagccttttggtcaaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGG
   |||||| |      ||||  | | | |  || |   |  |||||  |||||||| | |   |  | | |   || ||     |||| ||| ||||| |||||||||| ||||| ||| | ||||| ||||||||||||||||| | |||||||||||| || || |||||  | || || |
agatgtcat-tttattttatttctattacacttgaatatggctaatt-ccataaaaaca-accaacaaaagtatgaaattgcatgtttttgtccaaatttcagGTGCTTTATGCAGTTGTTTGCTTCCAGAAAGTCTTCAAGTAACCACTGTTAAACAGCTGCCCGAGTACCACAATTGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602598|gb|DB968880.1|DB968880
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAG                         GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGT
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGT
EST: gi|19348215|gb|BM892747.1|BM892747
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAG                         GTGCTTTGTGCA
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCA
EST: gi|192330241|gb|FK019836.1|FK019836
EST:     ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGTTAG                         GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA
EST: gi|151402056|gb|EV271869.1|EV271869
EST:     ATTGACTGGGAAACAAATCCCAGGT-GGGTGAATCGGCTTGCTAAGCTAG                         -TGCTTTGTGCAGCTGTCTACTTCCTGAA-GTCTTCA-GTA-CA-GTGT-A
genomic: ATTGACTGGGAAACAAATCCCAGGTTGGGTGAATCGGCTTGCTAAGCTAGgtaaaaaccg ... aaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataaaaatacaatgagcataatcctaagttcagccttttggtcaaaattgcagGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGTCTTCAAGTAACAAGTGTTAAACAGCTACCTGAATACCATGAATGCTCGG
     aaaatacaat  TA-rich tract