1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctctctctctttctccttgctttaactttttcaactagtttttatgtgtgcgctagatctgatatttctagagtttgttttttccttcttaatt...
species | Glycine max |
transcript | GLYMA17G12670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|213602598|gb|DB968880.1|DB968880
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|213600677|gb|DB956425.1|DB956425
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|7458568|gb|AW666018.1|AW666018
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGGTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|19348215|gb|BM892747.1|BM892747
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|8282715|gb|BE020276.1|BE020276
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|8282691|gb|BE020252.1|BE020252
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|26049081|gb|CA785534.1|CA785534
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAGEST: gi|151402056|gb|EV271869.1|EV271869
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
EST: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAG TACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
genomic: TAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctct ... tctgaaatagTACATGGTAAGGAGTATGGTTTTGGAGCCCATGACTTCCCAGCTAGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATCAACACGCATGTGCTCTTGAATGTCTACGATCTCACCCCTGTCAATAATTACGTCTACTGGTTTGGATTTGGCATCTTTCACTCTGGCATTGAAGgtctctctctctctctttctccttgctttaactttttcaactagtttttatgtgtgcgctagatctgatatttctagagtttgttttttccttcttaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG