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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAGGATGGCTGCAGTTATATTTGGTGGAGTAGCCACTTTGAACTTGGCTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacattagctaaatttcatggctctatcttatcttatattttttaaattcattaaatgggagatgttttgtgtgtag

Basic information

species Glycine max
transcript GLYMA17G12640.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717809|gb|BW668946.1|BW668946
EST:     GAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: GAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|209717808|gb|BW668945.1|BW668945
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|31561872|gb|CD487710.1|CD487710
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|58024486|gb|CX711227.1|CX711227
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|193319771|gb|FK285194.1|FK285194
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|298172604|gb|HO019644.1|HO019644
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGCTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTAGGATGGCTGCAGTTATATTTGGTGGAGTAGCCACTTTGAACTTGGCTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacattagctaaatttcatggctctatcttatcttatattttttaaattcattaaatgggagatgttttgtgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA