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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacattagctaaatttcatggctctatcttatcttatattttttaaattcattaaatgggagatgttttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATATGCAAACTGTGCAACGGGAACGCCACCATATCTTGGTCCCCAATGTTCG

Basic information

species Glycine max
transcript GLYMA17G12640.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717809|gb|BW668946.1|BW668946
EST:     GAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: GAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|209717808|gb|BW668945.1|BW668945
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|31561872|gb|CD487710.1|CD487710
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|58024486|gb|CX711227.1|CX711227
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|193319771|gb|FK285194.1|FK285194
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
EST: gi|298172604|gb|HO019644.1|HO019644
EST:     CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGG                         GAAAAAGTTGCGCTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA
genomic: CTTCTGCTGCTACCATCAAAGTGCTTCGGTTTGCATCTGAGAAGAAACGGgtaaacatta ... ttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatcttatcttatattttttaaattcattaaatgggagatgttttgtgtgtagGAAAAAGTTGCGTTGCCCTGTTGGGTTTGTAGAGGGAAGGGGTTTTATATATGCAAACTGTGCAACGGGAACGCCACCATATCTTGGTCCCCAATGTTCG
      ttatcttatatttttt  TA-rich tract