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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTTGGACGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactttgttgtttcatttatgatttgcctgtaggcagtagctaccaaatgccagcaatattatttactatcacatctctctctttatgtctatatatatatatatatattattgaacatgtattctgagcatttggtttgtttgcag

Basic information

species Glycine max
transcript GLYMA17G12430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12430.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02650.t01 (Vitis vinifera), 5'ss of exon 4
AGCACTTGGACGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgca----ctttgttgtttcatttatgatttgcctgtaggcagtagctaccaaatgccagcaatattatttactatcacatctctctcttt-atgtctatatatatatatatatattattgaacatgtattctgagcatttggtttgtttgcag
|||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |  || ||||| || || |||||||||||||| |||||||| ||||||| ||    || | |   |   | | |   |  |    |  || |  ||  || |  |  |||  | ||  | |  ||  |||| ||| ||| ||  | ||   | |||   |   || ||       || ||                      
AGCACTTGGACGAGCATGTGGAGTCACAAGGCCAGTGATTGCTTGTTCTGTGACGAGCAACGAAGGAAGCCAGTTGAAATCTCAAATACAGCAACTTAAGgtatccatgtcctctctctctctctctctctctctcactcactcactcactctcacacacacgca-cactacattcattctaatctttctttttgatcaccatgcctgtatgc-tgagttttttcttgcctaatccag-------------------

upper sequence: GLYMA17G12430.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g05140.t01 (Vitis vinifera), 5'ss of exon 4
AGCACTTGGACGTGCATGTGGGGTCACCAGGCCAGTGATTGCTTGTTCTGTGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactttgttgtttcatttatgatttgcctgtaggcagtagctaccaaatgccagcaatattatttactatcacatctctctctttatgtctatatatatatatatatattattgaacatgtattctgagcatttggtttgtttgcag
||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| |  ||||| || || ||| ||||||||||||| || ||||| |||||    || |||  ||      |||  | ||  | |      |   |  |||||   |   | | |  ||   |||      ||   ||| | | | |  ||  | ||  |                                         
AGCACTTGGCCGTGCATGTGGAGTCACAAGGCCTGTCATTGCCTGTTCGGTGACTAGCAATGAGGGAAGCCAACTGAAATCTCAAATACAACAACTCAAGgt----accttgccgtcaa---tatcttctgtttttcaaatttttttgtcaaattttacttacagtgattttgatctggcagctgaattttttttttttcatg-aaatgcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182539|gb|HO031274.1|HO031274
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298180380|gb|HO025581.1|HO025581
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|6725768|gb|AW310167.1|AW310167
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298185053|gb|HO030266.1|HO030266
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298171220|gb|HO016252.1|HO016252
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298195944|gb|HO044335.1|HO044335
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|6566245|gb|AW233926.1|AW233926
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|193711701|gb|FK648290.1|FK648290
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|26059372|gb|CA802286.1|CA802286
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298189335|gb|HO037738.1|HO037738
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|18039291|gb|BM307585.1|BM307585
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
EST: gi|298164419|gb|HO014064.1|HO014064
EST:     TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAG                         GATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA
genomic: TGACAACTAATGAAGGGAGTCAATTGAAATCTCAAATTCAGCAACTAAAGgtatgcactt ... ttgtttgcagGATGCTATTGAGAAGCTTTTAATCTGAAAAATTCATAATCGGTATGATAAA