1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaccatctttgtctttctcttttcccttccaagtcaatttcgattcactgctgaattttctttcttgtgttcgcgtttgtgcaaaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCTCAATAACCATACTAGACCTTGTTCAACAAGCTGCCAACTACAAGCAGC
species | Glycine max |
transcript | GLYMA17G12430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAACCCTAGCTAGTCCTCTCCCCCTTCCTCCGTTCGATCTACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGGCGGATGCCCAACTEST: gi|298180380|gb|HO025581.1|HO025581
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTT-GGCGGATGCCCAACT
EST: GGAAAAACCCTAGCTAGTCCANNNNNNNTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|208173600|gb|GD970263.1|GD970263
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|298185053|gb|HO030266.1|HO030266
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GGAAAAACCCTAGCTAGTCCTCTCCCCCTTCCTCCGTTCGATCTACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGGCGGATGCCCAACTEST: gi|298171220|gb|HO016252.1|HO016252
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTT-GGCGGATGCCCAACT
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGGCGGATGCCCAACTEST: gi|298195944|gb|HO044335.1|HO044335
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTT-GGCGGATGCCCAACT
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|6566245|gb|AW233926.1|AW233926
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|26059372|gb|CA802286.1|CA802286
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: TCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|298189335|gb|HO037738.1|HO037738
genomic: TCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|18039291|gb|BM307585.1|BM307585
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCEST: gi|298164419|gb|HO014064.1|HO014064
genomic: GAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
EST: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATG ACAGGAGAAGCAGTGGACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
genomic: GGAAAAACCCTAGCTAGTCCACTCCCCCTTCCTCCGTTCGATCAACAATGgtaccatctt ... aaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTC
ttcgattcactgctgaattttctttcttgtgttcgcgtttgtgcaaaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCTCAATAACCATACTAGACCTTGTTCAACAAGCTGCCAACTACAAGCAGC
aattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccatctttgtctttctcttttcccttccaagtcaatttcgattcactgctgaattttctttcttgtgttcgcgtttgtgcaaaaaatgcagACAGGAGAAGCAGTGAACCCCAAAGCTTACCCTTTGGCGGATGCCCAACTCTCAATAACCATACTAGACCTTGTTCAACAAGCTGCCAACTACAAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC