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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttattaaaccctgatcatttattatattgcacagaacgtaaatattataggatctttggtacacaactttggctgattagttgatattttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGGCTATCTTCATCATATCACAGGACTTGATCATGAGTTTCATTTGAGTCTG

Basic information

species Glycine max
transcript GLYMA17G12200.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253599|gb|BE821365.1|BE821365
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
EST: gi|6070954|gb|AW100341.1|AW100341
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
EST: gi|31306269|gb|CD391472.1|CD391472
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
EST: gi|31473248|gb|CD415636.1|CD415636
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
EST: gi|31458065|gb|CD400093.1|CD400093
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
EST: gi|31467294|gb|CD409322.1|CD409322
EST:     TTCATTTCGGGCTGATGTTGGAGAGTAACTACCAAGCTAAGATGGATAAT                         GTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG
genomic: TTCATTTCGGGCTGATGTTGGAGAGTAACAACCAAGCTAAGATGGATAATgtaagtatta ... tttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattataggatctttggtacacaactttggctgattagttgatattttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGGCTATCTTCATCATATCACAGGACTTGATCATGAGTTTCATTTGAGTCTG
                                            ttttatttc  CT-rich tract
                               tgattagttgatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatttattaaaccctgatcatttattatattgcacagaacgtaaatattataggatctttggtacacaactttggctgattagttgatattttatttcagGTTTCTGAAAAGCATTTAATGCCAAGGGCTGCGCTATTGAATAAATGAAGGCTATCTTCATCATATCACAGGACTTGATCATGAGTTTCATTTGAGTCTG

- - - - - accctga
- - - - - - - - - - - - - - - tgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga