1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaagctaataagtcatcatggtacgtccactttattatatattggcatggctaagtgttgatgctcctagtcctagctaattaacattttaattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTG
species | Glycine max |
transcript | GLYMA17G12200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAG GGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGEST: gi|31458065|gb|CD400093.1|CD400093
genomic: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGgtgaggttca ... taattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCG
EST: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAG GTACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGEST: gi|298180946|gb|HO022385.1|HO022385
genomic: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGgtgaggttca ... taattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCG
EST: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAG GGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCG
genomic: CCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGgtgaggttca ... taattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCG
gcatggctaagtgttgatgctcctagtcctagctaattaacattttaattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTG
ttttc CT-rich tract
tagctaattaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagctaataagtcatcatggtacgtccactttattatatattggcatggctaagtgttgatgctcctagtcctagctaattaacattttaattttcagGGACCTGGGCAGTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTG
- - - - - - - catcatg
- - - - - - - - - - - - cgtccac
- - - - - - - - - - - - - - - - - - - - - - -gcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - agtgttg