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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAATAGGATTGCAATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCgtgagtatatatttgcctttttcctgtttaatatccaatctcaaattcatcataaccacatatactatatagctagtttcttttctttttttttattttttaaatataatccatgttgttatctacaatattgatctgatcatgagttgtttttctcttttccag

Basic information

species Glycine max
transcript GLYMA17G12200.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253599|gb|BE821365.1|BE821365
EST:     GTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGC                         CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
genomic: GTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCgtgagtatat ... tcttttccagCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
EST: gi|31306269|gb|CD391472.1|CD391472
EST:     AATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGC                         CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
genomic: AATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCgtgagtatat ... tcttttccagCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
EST: gi|31473248|gb|CD415636.1|CD415636
EST:     AATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGC                         CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
genomic: AATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCgtgagtatat ... tcttttccagCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
EST: gi|31458065|gb|CD400093.1|CD400093
EST:     AATGCGTGCACCCACCACTGATGTAACTGAGGAAAGGGTTGTGAACAGGC                         CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA
genomic: AATGCGTGCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAACAGGCgtgagtatat ... tcttttccagCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA