1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacttaatgctttacaaataattttactacatatatattcgatgtaattggtgcataaagcagctttgaaacgtctttgttcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAAC
species | Glycine max |
transcript | GLYMA17G12200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA GGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAEST: gi|6070954|gb|AW100341.1|AW100341
genomic: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAgtaacttaat ... tcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
EST: CTGCTTATAACCAGTTTATAAA GGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAEST: gi|31306269|gb|CD391472.1|CD391472
genomic: CTGCTTATAACCAGTTTATAAAgtaacttaat ... tcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
EST: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA GGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAEST: gi|31473248|gb|CD415636.1|CD415636
genomic: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAgtaacttaat ... tcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
EST: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA GGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAEST: gi|31458065|gb|CD400093.1|CD400093
genomic: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAgtaacttaat ... tcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
EST: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAA GGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
genomic: CTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAACCAGTTTATAAAgtaacttaat ... tcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGA
tattcgatgtaattggtgcataaagcagctttgaaacgtctttgttcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAAC
ttcttac putative branch site (score: 2)
tctttgttctt CT-rich tract
atgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttaatgctttacaaataattttactacatatatattcgatgtaattggtgcataaagcagctttgaaacgtctttgttcttacgcagGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC