Sequence
atgc intronic sequence ATGC exonic sequenceCTTTTGTTGACGGCACCGTCATGTCTTCCCTCAGCAGAGAGCTTGTTTTTCTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagtttacgaaaaaaattaaatttattgcagtttttttatatatttaatttaattttttttattttgtatgtgaatttgtgaacgtgaag
Basic information
species | Glycine max |
transcript | GLYMA17G12110.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 2
CTTTTGTTGACGGCACCGTCATGTCTTCCCTCAGCAGAGAGCTTGTTTTTCTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagtttacgaaaaaaattaaatttattgcagtttttttatatatttaatttaattttttttattttgtatgtgaatttgtgaacgtgaag-----------------------------------
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GCGGTTTTGGAGTCGCGAAGATGTCTTCTCTTAGCAGAGAACTCGTGTTTCTTATACTTCAGTTTCTCGATGAAGAAAAATTTAAAGAAACTGTTCACAAgtacggcaaaattttctctattttcccttatttgtcattattgcg---actgactctaatattttcaaattttcgtgaggtgctgttgaattgatttgttacttattactatttttttttggggtgtggag
upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 1
CTTTTGTTGACGGCACCGTCATGTCTTCCCTCAGCAGAGAGCTTGTTTTTCTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagtttacgaaa-aaaattaaatttattgcagtttttttatatatttaatttaattttttttat---tttgtatgtgaatttgtgaacgtgaag----------
||||| || ||||| || |||||||| || ||||| || ||||| ||||| || ||||| || |||||||||||||||||||| || | | | | |||| | || | | | | | | ||||| | | |||| | ||| | | |||| |
--------------------ATGTCGTCGCTCAGTAGGGAGCTTGTGTTCCTCATCCTCCAGTTCCTCGACGAGGAGAAGTTCAAGGAGACTGTTCACAAgtaagtaaaaaaaaaagacaaaaaaggagagataaataggaaagaaaaaaatgagataaatttcgtacacgtacttgtgt-tgacatcatttgcgtgctgtggtggtcag
upper sequence: GLYMA17G12110.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 1
CTTTTGTTGACGGCACCGTCATGTCTTCCCTCAGCAGAGAGCTTGTTTTTCTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagtttacgaaaaaaattaaatttattgcagtttttttatatatttaatttaattttttttat---tttgtatgtgaatttgtgaacgtgaag----------
||||| || ||||| || ||||| || || ||||| || ||||| ||||| || ||||| || |||||||||||||||||||| || | | |||||| | || | | | | | | ||||| | | |||| | ||| | | |||| |
--------------------ATGTCGTCGCTCAGTAGGGAGCTCGTGTTCCTCATCCTCCAGTTCCTCGACGAGGAGAAGTTCAAGGAGACTGTTCACAAgtaagtaaaaaaaaagaaaaaaaaggagagataaataggaaagaaaaaaatgagataaatttcgtacacgtacttgtgt-tgacatcatttgcgtgctgtggtggtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192308621|gb|FG999716.1|FG999716EST: CTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAA GTTGGAGCAAGAATCGGGATTTTTCTTTAACATGAGGTATTTTGAGGATAT
genomic: CTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagt ... gaacgtgaagGTTGGAGCAAGAATCGGGATTTTTCTTTAACATGAGGTATTTTGAGGATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTTGTTGACGGCACCGTCATGTCTTCCCTCAGCAGAGAGCTTGTTTTTCTCATACTTCAGTTTCTCGATGAAGAGAAATTTAAGGAGACTGTTCACAAgtacgttagtttacgaaaaaaattaaatttattgcagtttttttatatatttaatttaattttttttattttgtatgtgaatttgtgaacgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA