Sequence
atgc intronic sequence ATGC exonic sequenceAAATAAAAGCATGGTTGTATGATAACATGGGTTCTAGGGTTGACTATGATGCACCTGGTCATTCTTCTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagataaatgtttttcctcttcttatcttcccttgctctgtttgatgcatgaattagtttatttattttcttattatatgtctggtttttag
Basic information
species | Glycine max |
transcript | GLYMA17G12110.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G12110.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 15
AAATAAAAGCATGGTTGTATGATAACATGGGTTCTAGGGTTGACTATGATGCACCTGGTCATTCTTCTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagataaatgtttttcc--tcttcttatcttcccttgctctgtttgatgcatgaattagtttatttattttcttattatatgtctggtttttag-------------------------------
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AAATAAAGGCATGGTTGTATGATAACATGGGCTCTAGAGTTGATTATGATGCACCGGGTCATTCATCTACAACAATGGCATACAGTGCTGATGGGACAAGgtttttatatgacttctctttcattattctgatttcccccatttctaggtgat-tagaagttgcttt--ttgctctgttatatgttgtctaactggagtatctcctaaatgatatatggacaatccatag
upper sequence: GLYMA17G12110.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 14
AAATAAAAGCATGGTTGTATGATAACATGGGTTCTAGGGTTGACTATGATGCACCTGGTCATTCTTCTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagataaatgtttttcctcttcttatcttccc--ttgctctgtttgatgcatgaattagtttatttattttcttattatatgtctggtttttag-
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AGATAAAAGCCTGGCTCTATGATCTTCTTGGTTCTAGAGTTGACTATGATGCACCAGGGCATTGGTGCACTACAATGGCTTACAGTGCTGATGGCACTAGgtatgtagaaccttgattcgccttttatacgtgtcaaagttgtttggtttaattcactaaatgctccatctaaaatggatgtttgtggttgccatctgga
upper sequence: GLYMA17G12110.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 5'ss of exon 14
AAATAAAAGCATGGTTGTATGATAACATGGGTTCTAGGGTTGACTATGATGCACCTGGTCATTCTTCTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagataaatgtttttcctcttcttatcttcccttgctctgtttgatgcatgaattagtttatttattttcttattatatgtctggtttttag------
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AGATAAAAGCTTGGCTCTATGATCTCCTTGGATCTAGAGTTGACTACGATGCACCTGGTCATTGGTGCACTACAATGGCTTACAGTGCTGACGGCACTAGgt--attccaaactttaatctcctttcttacgttttgaagttatttggtgtgcac-aactaaacgctctatccaagatcaatgtgcgtggttttcttgtagcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193697316|gb|FK641076.1|FK641076EST: CTACTACAATGGCATATAGTGCTGATGGAACAAG ATTGTTCTCGTGTGGAACGAATAAAGAAGGGGAATCATTTCTAGTAGAATG
genomic: CTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagat ... tggtttttagATTGTTCTCGTGTGGAACGAATAAAGAAGGGGAATCATTTCTAGTAGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATAAAAGCATGGTTGTATGATAACATGGGTTCTAGGGTTGACTATGATGCACCTGGTCATTCTTCTACTACAATGGCATATAGTGCTGATGGAACAAGgttaagagataaatgtttttcctcttcttatcttcccttgctctgtttgatgcatgaattagtttatttattttcttattatatgtctggtttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA