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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGATAAGAAGGGTGATAATGACGAACAAATTGTGAGTCCTGCTGAACAGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttcattctatttctagttcgtgattttgtttttaaaaccatttgtagttattaagattctgcgtgaaatttttgtgcagttatttcttttgcattgatttttagtgttttatcttattttatttttgcag

Basic information

species Glycine max
transcript GLYMA17G11820.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413849|gb|BF425860.1|BF425860
EST:     AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
EST: gi|11688267|gb|BF595943.1|BF595943
EST:     AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCAGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
EST: gi|6567259|gb|AW234870.1|AW234870
EST:     TCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: TCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
EST: gi|7690945|gb|AW759081.1|AW759081
EST:     AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
EST: gi|22522112|gb|BU080923.1|BU080923
EST:     AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
EST: gi|10843300|gb|BF066607.1|BF066607
EST:     AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATG                         GCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT
genomic: AGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGgtaatttttc ... atttttgcagGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGT