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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttctacttttgatttgcatacaaaccaactgtaagattgttctacactacatcttacataattagagtataaa...

Basic information

species Glycine max
transcript GLYMA17G11810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g03620.1 (Oryza sativa), 5'ss of exon 5
GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttctact--tttgatttgc--atacaaaccaactgtaagattgttct--acactacatcttacataattagagtataaa
|      ||||| || ||| || || |||||||| || ||||| |||||||||||||| ||||  ||||| ||||| ||||| ||||| ||| ||  ||  || | ||    |       || |  | ||||  ||  ||  | |||  || ||    ||| |    ||  ||| ||   ||    |  |      
GCCAATATGGAAGAACCCTGGATTTTAATCAGCGTCTCGAAATCGCAATTGATGTTGCACATGCACTGACTTATCTTCATCTATATGCTGgtaagccatctctgtttttccttggatcaatattgatgtgatgcgctcatctataccttctatagagatgtgcctgccagcacaactctaatgcccatcg------

upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G159992_T01 (Zea mays), 5'ss of exon 6
GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttctacttttgatttgcatacaaaccaactgtaagattgttctacactacatcttacataattagagtataaa------------
||   | ||||| | ||||||| || |||||||| || |||||||||||||| || |||||||  || || ||||| |||||||||||||||   |          ||||  |  |    | ||| | ||| ||||| |||  |       |  || |||| | | ||||  |  |  ||  |  ||               
GTCAACATGGAAGAGTCCTAGATTTTAATCAGCGTCTAGAAATTGCAATTGACGTGGCTCATGCACTTACTTATCTTCATCTGTATGCAGgtatat----------ttctaatacctgcatgcttataatt-gcatataaataataaagtggtgtgatctatatttcatcagat-tggttccaccattttacctctgcaatg

upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G061537_T01 (Zea mays), 5'ss of exon 5
GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttctact--tttgatttgcatacaaaccaactgtaagattgttctacactacatcttacataattagagtataaa---
||   | |||   | |  | |  || |||||||| |||||||| || || |||||||| |||||  |||| ||||||||||| |||||||||      ||    || |  | ||| | ||      |||  | |   || || |||| |  | | |  | |     | |  ||| || || |  ||||   |   
GTCAACATGGCCTAGTTTTGGGATTTAATCAGCGGCTTGAAATAGCTATAGATGTTGCCCATGGGTTGACTTATCTGCATCTCTATGCAGgt--acactttgcgtacttagttcagcatcaggcaatttagtcttttta-aatccaaat-catgttcatgcacttgtgctgctt-caaaactgcagtaaggaagt

upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G055957_T02 (Zea mays), 5'ss of exon 5
GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttcta-cttttgatttgcatacaaaccaact-gtaagattgttctacactacatcttacataattagagtataaa
||   | |||   | |  | |  || |||||||| || |||||||| || |||||||| |||||  |||| ||||||||||| |||||||||      ||    ||    | | | | ||   |  || | |||  | ||| |||| |  |    | || || | | | |    |   |    | | |  ||
GTCAACATGGCCTAGTTTTGGGATTTAATCAGCGGCTCGAAATTGCTATAGATGTTGCCCATGGATTGACTTATCTGCATCTCTATGCAGgt--acacttcacatacatagttaagcatcagtcaatttagttgttttcaatccaattcatgcactcgtgctgctcaaaactgcagtaaggaggtgaaccaa

upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0118g00210.t01 (Vitis vinifera), 5'ss of exon 5
GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgattactctattctgctcaccttctacttttgatttgcatacaaaccaactgtaagat-tgttctacactacatcttacataattagagtataaa
||  ||| || |||||||| || |||||||| || ||||||||  | |||||||||||||||| |||||| || || ||||| ||||||||| || ||    | | ||  | | | ||  | | ||  |||   ||| ||| |  |  |   |  |  || | |||  |  | | |   | | | || |  
GTCAGCGGGGGAAAATCCTGGATTTCAATCAACGACTTGAAATCTCCATTGATGTTGCTCATGCCCTGACTTACCTCCATCTATATGCAGgtgagagaactgtttgtttagttaatctgtt-ccttaaattgttatagaaaacttcatttgtacatcatcgaaactctaattcatagcttgaaaatacagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193664201|gb|FK610433.1|FK610433
EST:     AATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAG                         AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
genomic: AATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
EST: gi|208069897|gb|GD867942.1|GD867942
EST:     ATGGCCTGACCTATCTGCATCTGTATGCAG                         AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
genomic: ATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
EST: gi|208314550|gb|GE113886.1|GE113886
EST:     CCTATCTGCATCTGTATGCAG                         AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
genomic: CCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG