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gtaagaagtaactcgtatgtagtttaaaagtctgtagctaaccttagaatgctcaagttctggattcttttttgttaggaaaattatcaaaattggaatatgaaatgctttgactgtcctgtatcactaaaaatggtagaagtacttattttctctgtcctgacgtggctaaatcgtatagGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACA
species | Glycine max |
transcript | GLYMA17G11810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAG GAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGEST: gi|193393831|gb|FK359908.1|FK359908
genomic: GGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAGgtaagaagta ... aatcgtatagGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTG
EST: GGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAG GAACATTTTTGATAGTTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTEST: gi|208304402|gb|GE103125.1|GE103125
genomic: GGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAGgtaagaagta ... aatcgtatagGAACA-TTTTGATAG-TTTGAGAACAGAATTCAGCAGTGAAATTGAACTTT
EST: GGCCGGGTTGTGGCTTGTTAAAACGTGCAAAAAAG GAACATTTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTEST: gi|208321373|gb|GE119510.1|GE119510
genomic: GGCCGGGTTGTGGC-TG-TAAAACGTGCAAAAAAGgtaagaagta ... aatcgtatagGAACA-TTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTT
EST: GGCCGGGTTGTGGCNGTAAAACGTGCAAAAAAG GAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAAATTGAACTTTT
genomic: GGCCGGGTTGTGGCTGTAAAACGTGCAAAAAAGgtaagaagta ... aatcgtatagGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTG-AAATTGAACTTTT
ctaaaaatggtagaagtacttattttctctgtcctgacgtggctaaatcgtatagGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACA
tacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagtaactcgtatgtagtttaaaagtctgtagctaaccttagaatgctcaagttctggattcttttttgttaggaaaattatcaaaattggaatatgaaatgctttgactgtcctgtatcactaaaaatggtagaagtacttattttctctgtcctgacgtggctaaatcgtatagGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC