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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAACGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgccttgttatctgccaacaatctgtttttgaatattgaatctaatgcagaatgtcattttgatattattggcag

Basic information

species Glycine max
transcript GLYMA17G11810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G159992_T01 (Zea mays), 5'ss of exon 5
CGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAACGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgccttgttatctgccaacaatctgtttttgaatattgaatctaatgcagaatgtcattttgatattattggcag
|||||  |||||| | |||| |||| || ||| |||||||| || ||| || | || || |||| ||| ||||||||||| |||||||||||| | ||||||||      |||   || |        ||  |||| ||  | |     ||      ||  | |  |   |    |  ||||
CGAAATTTGGTGAGGTTACTGGGTTTTACTGATAAAGGAAATGAGCGCATTATCATCACTGAGTATGTTCCAAATGGTACTCTTAGAGAACATCTAGATGgtaaattgtgcttcccatattgttttcttcacttttcgatcaatttgaataccttcaaacattacatgccttcattctgcag

upper sequence: GLYMA17G11810.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0118g00210.t01 (Vitis vinifera), 5'ss of exon 4
CGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAACGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgccttgttat----ctgccaacaatctgtttttgaatattgaatctaatgcagaatgtcattttgatattattggcag
||||| || |||||||| || || ||  |||| |||||||| || |||||| ||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||   |   |||     ||   |  |||    ||   | |   |    | ||   |  ||    |   || |  ||||||
CGAAATCTTGTGAAGCTGCTTGGCTACGTTGATAAAGGAAATGAGCGCCTTATTATTACTGAATTTGTGCCAAATGGTACTCTTAGAGAACATCTGGATGgtaagactatttatctataagattgattaatatcctaattcatacagcaatgtcagtgttcatagttggct-actacttctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193664201|gb|FK610433.1|FK610433
EST:     AACATTTGGATG                         GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG
genomic: AACATTTGGATGgtaagactgc ... ttattggcagGTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG
EST: gi|208132787|gb|GD927360.1|GD927360
EST:     TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATG                         GTATGCGTGGAAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATT
genomic: TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgc ... ttattggcagGTATGCGTGGAAAAA-TCCTAGACTTCAATCAGCGCCTTGAAATTGCAATT
EST: gi|208304402|gb|GE103125.1|GE103125
EST:     TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATG                         GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG
genomic: TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgc ... ttattggcagGTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG
EST: gi|208321373|gb|GE119510.1|GE119510
EST:     TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATG                         GTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG
genomic: TCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGgtaagactgc ... ttattggcagGTATGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTG