1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctagtatatacatgcaacatgatttccctatagcttaataatatttatagatctgccaattgaatcttgatgcctgacctttgtcatctcttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCAAGGCTAGGACC
species | Glycine max |
transcript | GLYMA17G11810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAG AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGEST: gi|208069897|gb|GD867942.1|GD867942
genomic: AATTGCAATTGATGTTGCTCATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
EST: ATGGCCTGACCTATCTGCATCTGTATGCAG AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGEST: gi|208314550|gb|GE113886.1|GE113886
genomic: ATGGCCTGACCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
EST: CCTATCTGCATCTGTATGCAG AAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
genomic: CCTATCTGCATCTGTATGCAGgtcagtgatt ... cttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAG
ttatagatctgccaattgaatcttgatgcctgacctttgtcatctcttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCAAGGCTAGGACC
gcctgac putative branch site (score: 3)
cctttgtcatctctt CT-rich tract
aattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagtatatacatgcaacatgatttccctatagcttaataatatttatagatctgccaattgaatcttgatgcctgacctttgtcatctcttggaacagAAAAGCAAATTATTCATCGAGATGTGAAATCATCCAATATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCAAGGCTAGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - acatgca
- - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc