1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttataatcaaaattttgctgggagacttttgaacaagggaagtttccccaaataattaagcgaaatctgacctgctacaattattgttctgtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAAACCCATTTGCTCCCAACTACTCAATGACATCTTTGGAAAAGGTTCTTA
species | Glycine max |
transcript | GLYMA17G11800.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAG GTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAEST: gi|20813758|gb|BQ298236.1|BQ298236
genomic: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAGgtaagaaata ... gtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACA
EST: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAG GTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAEST: gi|11412226|gb|BF424237.1|BF424237
genomic: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAGgtaagaaata ... gtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACA
EST: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAG GTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAEST: gi|254342026|gb|GR853163.1|GR853163
genomic: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAGgtaagaaata ... gtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACA
EST: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAG GTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACA
genomic: AGTTGGTCAAGGATTTGGAGATTCAAAGGGATACGAAGAACAGAGGGCAGgtaagaaata ... gtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACA
ccccaaataattaagcgaaatctgacctgctacaattattgttctgtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAAACCCATTTGCTCCCAACTACTCAATGACATCTTTGGAAAAGGTTCTTA
atctgac putative branch site (score: 3)
ttctgttt putative PPT
aattattgttctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataatcaaaattttgctgggagacttttgaacaagggaagtttccccaaataattaagcgaaatctgacctgctacaattattgttctgtttaattagGTACATTTGGAGCTCTTGTACTGTCCATTTGGCATGGAGAATAGCTTTACAAACCCATTTGCTCCCAACTACTCAATGACATCTTTGGAAAAGGTTCTTA
- - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctac