1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATATCTGCTGAAGACTTGCCTGCAACAGATTTCATGGGGAAATCTGATCCTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGGgtattcccaattttgtggcttaattaattatgaacacattacaaacttatttgggcctaaaagtttgttaatttctcag
species | Glycine max |
transcript | GLYMA17G11800.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAACAAAACCAGG GTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTTEST: gi|20813758|gb|BQ298236.1|BQ298236
genomic: AAACAAAACCAGGgtattcccaa ... aatttctcagGTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTT
EST: CTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGG GTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTTEST: gi|11412226|gb|BF424237.1|BF424237
genomic: CTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGGgtattcccaa ... aatttctcagGTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTT
EST: TTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCCAGG -TTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGGEST: gi|254342026|gb|GR853163.1|GR853163
genomic: TTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACC-AGGgtattcccaa ... aatttctcagGTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGT
EST: CTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGG GTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTT
genomic: CTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGGgtattcccaa ... aatttctcagGTTGTGAATGACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATCTGCTGAAGACTTGCCTGCAACAGATTTCATGGGGAAATCTGATCCTTTTGTTGTTCTTACCTTGAAGAAAGCAGAAACAAAAAACAAAACCAGGgtattcccaattttgtggcttaattaattatgaacacattacaaacttatttgggcctaaaagtttgttaatttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA