1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgttttattactctattcatgctgcaaaccactatccacgacttagtaagttgataacttttggtttcttctgataagttcttcccgtaatgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGGAATACAAAGAACGTTTTGTGCTAGATGGAGCCAAATCTGGCTTTTTGA
species | Glycine max |
transcript | GLYMA17G11800.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAG GACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGEST: gi|6913840|gb|AW395370.1|AW395370
genomic: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAGgtaaacaatt ... atgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGG
EST: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAG GACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGEST: gi|20813758|gb|BQ298236.1|BQ298236
genomic: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAGgtaaacaatt ... atgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGG
EST: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAG GACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGEST: gi|254342026|gb|GR853163.1|GR853163
genomic: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAGgtaaacaatt ... atgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTG
EST: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAG GACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAAGG
genomic: TACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGAAAGgtaaacaatt ... atgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAA-GG
agtaagttgataacttttggtttcttctgataagttcttcccgtaatgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGGAATACAAAGAACGTTTTGTGCTAGATGGAGCCAAATCTGGCTTTTTGA
ataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttttattactctattcatgctgcaaaccactatccacgacttagtaagttgataacttttggtttcttctgataagttcttcccgtaatgcatgcagGACTATATGGGCAGATGCATATTGACGCTTACCAGGGTAATACTGGAAGGGGAATACAAAGAACGTTTTGTGCTAGATGGAGCCAAATCTGGCTTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -tcatgct
- - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - ccacgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttccc