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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaccttctgctttgtgctttagatttggatttcgttgtggttcttcattttttgaagaatttgttaactctgcatcggttttgttagGCTGCTTCTGAGCTCATAAAAGCGTCGGTGGAACCTATTCTGGAAGAATATAGACCCGTGGTTTTGGCGGCTCTTAAATTTTCCAAGTTTACTCTTGGTA

Basic information

species Glycine max
transcript GLYMA17G11800.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285222|gb|BI469113.1|BI469113
EST:     TAACTTGGCTTAACTCGCATCTCACCAAGATCTGGCCCTATGTTAACGAG                         GCTGCTTCTGAGCTCATAAAAGCGTCGGTGGAACCTATTCTGGAAGAATAT
genomic: TAACTTGGCTTAACTCGCATCTCACCAAGATCTGGCCCTATGTTAACGAGgtagtacctt ... gttttgttagGCTGCTTCTGAGCTCATAAAAGCGTCGGTGGAACCTATTCTGGAAGAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgtggttcttcattttttgaagaatttgttaactctgcatcggttttgttagGCTGCTTCTGAGCTCATAAAAGCGTCGGTGGAACCTATTCTGGAAGAATATAGACCCGTGGTTTTGGCGGCTCTTAAATTTTCCAAGTTTACTCTTGGTA
                             tgttaac  putative branch site (score: 2)
                                              ttttgtt  putative PPT
              attttttgaagaattt  TA-rich tract