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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCATTATAGCTATTCAAAAACAGGGGTATCTGGTCCTGTTCCTCCAGGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttgtgttgcatgttgctattctgttgtttaagtctatatttattggaatttttatattcatagagcttccttatacaagttgagttaatatac...

Basic information

species Glycine max
transcript GLYMA17G01580.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6747126|gb|AW317582.1|AW317582
EST:     GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: gi|17401384|gb|BM178166.1|BM178166
EST:     GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: gi|7286008|gb|AW598495.1|AW598495
EST:     AGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: AGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: gi|8827905|gb|BE211635.1|BE211635
EST:     GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: gi|4293058|gb|AI437851.1|AI437851
EST:     GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: gi|192296325|gb|FG989073.1|FG989073
EST:     GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG                         GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA