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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTTTATTGCTTCTTCCGTCCACTGTGAAGACCCATATCGGTACCTCACTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAgtactttcttttctttttcctaaataactaactgtcactattgttccttgttgatctcgtgcttctgttcttctgagaaaggaaacgcttttttcttagccatatcggctcatggaggggtagtttttgttgaacatgtttcgattttgcag

Basic information

species Glycine max
transcript GLYMA17G01580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237960|gb|BE806848.1|BE806848
EST:     CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAA                         GGGATCTTAATT
genomic: CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAgtactttctt ... gattttgcagGGGATCTTAATT
EST: gi|9204473|gb|BE330697.1|BE330697
EST:     CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAA                         GGGATCTTAATTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACA
genomic: CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAgtactttctt ... gattttgcagGGGATCTTAATTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACA
EST: gi|16997237|gb|BM086609.1|BM086609
EST:     TTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
genomic: TTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
EST: gi|7588537|gb|AW704260.1|AW704260
EST:     TTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
genomic: TTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
EST: gi|213598785|gb|DB968256.1|DB968256
EST:     ATCTATAATGTAAAGGGAAGGGAGGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
genomic: ATCTATAATGTAAAGGGAAGGGAGGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
EST: gi|213618027|gb|DB963660.1|DB963660
EST:     ATCTATAATGTAAAGGGAAGGGAGGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
genomic: ATCTATAATGTAAAGGGAAGGGAGGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
EST: gi|193347125|gb|FK310211.1|FK310211
EST:     CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAA                         GGGATCTTAATTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACA
genomic: CTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAgtactttctt ... gattttgcagGGGATCTTAATTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACA
EST: gi|7926178|gb|AW832204.1|AW832204
EST:     GGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG
genomic: GGTTCACATTCACATTACAAGCAACAACTTAACGCTTAACAACAGCACTCTCCCTAATCCTTCTGTGTATGCAAAATGAGACCATGCAAATGCAAATGCAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTTTTATTGCTTCTTCCGTCCACTGTGAAGACCCATATCGGTACCTCACTTGGAAGGTCACCTATGGTGACATCTATCCTCTTGGTGTCAAGCAACAAgtactttcttttctttttcctaaataactaactgtcactattgttccttgttgatctcgtgcttctgttcttctgagaaaggaaacgcttttttcttagccatatcggctcatggaggggtagtttttgttgaacatgtttcgattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA