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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGCCTTCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatccaaataattcgtgattgtccattttttattttaaagcattgatgaacttcctttaaattttcaaatgcatccctttcattacaccattgttgcaatgcattcatcatctgcag

Basic information

species Glycine max
transcript GLYMA17G01580.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845944|gb|BF068954.1|BF068954
EST:     TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG                         GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: gi|9204473|gb|BE330697.1|BE330697
EST:     TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG                         GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: gi|15815174|gb|BI787449.1|BI787449
EST:     TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG                         GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: gi|23727663|gb|BU761864.1|BU761864
EST:     TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG                         GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: gi|23727856|gb|BU761964.1|BU761964
EST:     TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG                         GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA