1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaaagatcaatggggaaaaaattgtagtatagtcatttttatcattttatgttttattagccagtaacttggtattctgttttgatgctccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCACTATGGATTGATCAAACCGAGTCGAACCATCATGCTTGCAAATTCTGCT
species | Glycine max |
transcript | GLYMA17G01580.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCAEST: gi|17401384|gb|BM178166.1|BM178166
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCAEST: gi|7286008|gb|AW598495.1|AW598495
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: AGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCAEST: gi|8827905|gb|BE211635.1|BE211635
genomic: AGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCAEST: gi|4293058|gb|AI437851.1|AI437851
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCAEST: gi|192296325|gb|FG989073.1|FG989073
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
EST: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCG GTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
genomic: GGGCCTACCCTTGATATTGCATCGTCTGTCTATCAGGCTAGAACTATCCGgtactctttg ... ccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCA
ttttatgttttattagccagtaacttggtattctgttttgatgctccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCACTATGGATTGATCAAACCGAGTCGAACCATCATGCTTGCAAATTCTGCT
tgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaagatcaatggggaaaaaattgtagtatagtcatttttatcattttatgttttattagccagtaacttggtattctgttttgatgctccaaaaccagGTGGAACCTGACAGCAAGTGGACCAAGACCAAACCCTCAGGGATCATACCACTATGGATTGATCAAACCGAGTCGAACCATCATGCTTGCAAATTCTGCT
- - - - - - - - aaaaaat