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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGGAAGGGGGTGAGATTGTTTTCGGTGGTGTTGATCCTGCTCACTATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataatttttttaatacttaataatgctttctttttttacctttttctatatgttaatttttatttttgttttcag

Basic information

species Glycine max
transcript GLYMA17G01500.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193457197|gb|FK423593.1|FK423593
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
EST: gi|37996199|gb|CF807788.1|CF807788
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
EST: gi|163922686|gb|EH038736.1|EH038736
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGGAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGGTAA-CCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGG-TAAACCCACTG