1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttaagtggttttatcagattgacattgacatttagttaaatgtgattacgcgagtcttcttctctgttgtcctcactcagcttctattttatttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTG
species | Glycine max |
transcript | GLYMA17G01500.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGNNNTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|209717932|gb|BW666125.1|BW666125
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|26047831|gb|CA784491.1|CA784491
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|10234880|gb|BE803768.1|BE803768
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: CTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|163920919|gb|EH039437.1|EH039437
genomic: CTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCGGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|13311308|gb|BG404959.1|BG404959
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|37996199|gb|CF807788.1|CF807788
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|208307795|gb|GE104981.1|GE104981
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTTGAGCTTAGCCCAGAGGAG TACATACTCAAGGTGGGTGAAGGTCCTGTGGCTACAGTGTATTAGEST: gi|7147298|gb|AW509220.1|AW509220
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCT-CAGTGTATTAG
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTEST: gi|17021150|gb|BM092184.1|BM092184
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
EST: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAG TACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
genomic: TAGTGTCCTTTACTATTGGTGGAAGAACTTTCGACCTTAGCCCAGAGGAGgtatgatttc ... atttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTT
ttacgcgagtcttcttctctgttgtcctcactcagcttctattttatttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTG
tcctcac putative branch site (score: 2)
cttctattttattt putative PPT
ttctattttatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagtggttttatcagattgacattgacatttagttaaatgtgattacgcgagtcttcttctctgttgtcctcactcagcttctattttatttattcagTACGTACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGTATTAGTGGCTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTG
- -agtggtt
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