Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGCTGCGGCAATTCAATATGGTACCGGAGCAATTTCTGGTTTCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactgaattgcggatcatcaatgtttatttcaatagggcttctttcataatgattagtaattagtagttggtatccccttcag

Basic information

species Glycine max
transcript GLYMA17G01500.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168974|gb|HO020278.1|HO020278
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGA
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGA
EST: gi|163928882|gb|EH038634.1|EH038634
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
EST: gi|208290744|gb|GE087638.1|GE087638
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
EST: gi|208270371|gb|GE071253.1|GE071253
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGATATATTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGC
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGC
EST: gi|163922686|gb|EH038736.1|EH038736
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
EST: gi|193656840|gb|FK606280.1|FK606280
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTT-GGCGGCCAAG
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
EST: gi|207797739|gb|GD771551.1|GD771551
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCGGCCAAG
EST: gi|193554768|gb|FK515549.1|FK515549
EST:     TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAG                         GAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACTATTTTTGGCGGCCAA
genomic: TCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactga ... tccccttcagGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTAC-ATTTTTGGCGGCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTGCTGCGGCAATTCAATATGGTACCGGAGCAATTTCTGGTTTCTTTAGCTACGACAGTGTCAGAGTTGGTGAAATAGTTGTAAAGAACCAGgcaatactgaattgcggatcatcaatgtttatttcaatagggcttctttcataatgattagtaattagtagttggtatccccttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC