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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttctttccattactaaccactatttggattttgaaattatcttgcgagggaaatgtaaccaagcttatttgaatgtgttaaaatgaatcataat...

Basic information

species Glycine max
transcript GLYMA17G00830.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 8
CTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttcttt-ccattactaa-ccactatttggattttgaaattatcttgcgagggaaatgtaaccaagcttatttgaatgtgttaaaatgaatcataat
||||||| |||||||| |||| ||| || |||||||| ||| ||| ||||||  |  ||||||| |||||||| || ||||||||||| || ||||| ||||||||| ||   |||  ||| | ||    ||| |    || || | ||            ||| |  |     |      | || ||   ||         
CTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAgtgagttcctaaaccaagacttatccgaggtttaggcaatgcaact-tccaattttttctgtgttattattaacaccgatctctgatattgtgtgcag----

upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 9
CTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtt-----tctttccattacta--accactatttggattttgaaattatcttgcgagggaaatgtaaccaagct-tatt-tgaatgtgttaaaatgaa--tcataat-----------------------
| || || ||||| ||||| ||||| || |||||||| ||| ||| ||||||  |  | |||||   ||||||||| || |||||||||||||||||||||||||||     |||||| |||  ||  ||||  |||     | |  ||  |  || |        | |  |     | |||| |  |||   |  ||| ||  || | ||                       
CAGACACAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTTCTGAAGAACATGACTCTTCAATATCTCAAgtgagttccaaatctttctatttatataaccaggattgaatctattcaaccaaattccttctctggtttctctttcttctattctccatgatatgtaataaaggtcgtgatcctgttgtgtgcttgctctgcag

upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 7
CTGATACCAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttctttccattactaaccactattt-ggattttgaaattatcttgcgagggaaatgtaaccaagcttatttgaatgtgttaaaatgaatcataat
||||||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||| ||| |||| |||||||| |||||||| || |||| ||||    |||   ||       | ||    ||  || |   | || ||    |    |  |    |||  |    ||   |||   |  |    | |
CTGATACTAAACATGATGGGAAGATAGACAAGGAAGAATGGCGAAGCCTTGTTTTGCGACATCCATCTCTTTTGAAGAATATGACCCTTCAATACCTAAAgtaagttctcctcctccaccctttttttttccaaatgatggatggaactggcatccgtctggctattt-gctgctggagatcctttaccctttagtgaact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21285464|gb|BQ473335.1|BQ473335
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: gi|15812919|gb|BI785194.1|BI785194
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: gi|193322912|gb|FK292004.1|FK292004
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: gi|19054016|gb|BM732683.1|BM732683
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: gi|208095384|gb|GD896608.1|GD896608
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: gi|151412447|gb|EV282259.1|EV282259
EST:     GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAA                         AGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: GTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAATATCTCAAgtgagtttct ... tccttggcagAGATATCACCACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA