1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatgatctgattacttaagagttagttgtatgccatatacatatgatgtgaaccttagaatttttatttgtcctgttcatgattttgtactgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATA
species | Glycine max |
transcript | GLYMA17G00830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGG GTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGEST: gi|9820145|gb|BE555655.1|BE555655
genomic: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGgtacatagaa ... ctgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAG
EST: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGG GTGTTTGACTTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGEST: gi|19054016|gb|BM732683.1|BM732683
genomic: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGgtacatagaa ... ctgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAG
EST: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGG GTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGEST: gi|151412447|gb|EV282259.1|EV282259
genomic: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGgtacatagaa ... ctgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAG
EST: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGG GTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAG
genomic: AGTTGGCATTGTTCAAGACGAACAAGAAAGAGAGCTTATTTGCAGATAGGgtacatagaa ... ctgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAG
gatgtgaaccttagaatttttatttgtcctgttcatgattttgtactgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATA
ttagaatttttatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgatctgattacttaagagttagttgtatgccatatacatatgatgtgaaccttagaatttttatttgtcctgttcatgattttgtactgtttgtagGTGTTTGACTTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATA
- - - - - - - - - - - - - - gtatgcc
- - - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatga