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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag

Basic information

species Glycine max
transcript GLYMA17G00830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 4
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagg--gagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag
|| ||||||||||| ||||| ||||| ||||  |||||||| ||||| || || ||||| || |||||||||||||| ||  | ||||| ||||| |||||||||  ||    ||  ||||   |  |   |  | || |  | |     ||  ||  | |  |||     ||  | | |||  | ||   || |  ||  |                                                                                           
TTATTTGATACAAAACACAATGGGATTCTTGGATTTGAAGAATTTGCTCGGGCGCTCTCAGTATTTCATCCCAATGCTCCCTTGGATGAGAAGATCGAGTgtaagtttgt--gatacttagggcatgtgcacagtttgtttgattccaaaataaggcatgtacataacggcagattatgttgatgtggtcaagatgaatagt-------------------------------------------------------------------------------------------

upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 6
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaa-----tgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag
|||||||||||||||||||| || ||||| |  ||||| || ||||| || |||||||| |||||||| || ||||| || || ||||| || ||| | |||| |       |  |   | | |  || ||   |      |     | ||  | || |    | |   |  | ||                                                                                                                        
TTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTgtacgtcccttttagcttgtatctcaaaaacaagattgggataacaca-ttaatgatatatactatttttttgcag------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 6
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatgtggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatgttttgtttctgtagtttatttatttccttaatgcattagttattaatagtaatgcatatgttgggcatttccaacttttcttttttgcag
|||||||| |||||||| || || ||||| |  ||||| |||||||| || |||||||||||||||||||| ||||| || || || || |||||||| |||| |  |     || ||   |||  || | ||  |    |  || |   || |   | |    | |  |    |  | |     | | |   | ||||      ||| | |  |   |||  ||| |                                                               
TTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTgtacgtct--ttgatcttacaaag--ttgatctgagaaaccatctatacaattt--atctgatgttgacatgctacatgtaacccatgaa---atatcactaacagttaccg-ggaacattgttttgcag-------------------------------------------------------------

upper sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 4
TTGTTTGATACAAAGCACAACGGGATACTTGATTTTGAAGAGTTTGCACGAGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatgacaaatgtttagaagactttagctatg-tggtctacttttttatctgggttttgaataggaagagcatttattggagagggagctagatcatg--ttttgtttctgtagtttatttatt--tccttaatgcattagttattaatagtaat--gcatatgttgggcatttccaacttttcttttttgcag
|||||||| ||||||||||| || ||||| ||||||||||||||||| || || |||||||||||||||||||||||||| ||||| || || ||||| ||||||  |   |  |  | ||| |||   |    |  | || |   | | | | || ||     |  |  ||||        |       |  | | | |||  ||| ||||       |||| |  |  | | | ||| |||   |  | ||  | ||     |||||| || ||  |||| |  | | ||||||||
TTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAGTTTGCGCGTGCCCTCTCTGTCTTTCATCCCAATGCACCCATTGAAGACAAAATTGACTgtaag--ttgtagttagtaagaggacaaaataagttcttgtgtgtgtgtgtgtgtgagtgagtgagtgagagagagagagaggacagacaatttggtttatgactttagtttactactcttatcttctacttcctgatg-atttcatgctgatgcttattgatgtatgtttgggatg-ccaaatcatttcttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812919|gb|BI785194.1|BI785194
EST:     AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG
genomic: AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ttttttgcagTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG
EST: gi|9820145|gb|BE555655.1|BE555655
EST:     TGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAACAAGGTTTTATTGAAAGACAGG
genomic: AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ttttttgcagTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG
EST: gi|19054016|gb|BM732683.1|BM732683
EST:     AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG
genomic: AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ttttttgcagTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG
EST: gi|151412447|gb|EV282259.1|EV282259
EST:     AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGT                         TTTCATTCCAATTGTATGATCTCAAACAGCCAGGTTTTATTGAAAGGCAGG
genomic: AGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTgtaagaatga ... ttttttgcagTTTCATTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGGCAGG