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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcgatttaacatctttactgggaaattgaaacacctgttttgccaagttcattattttctgtggctcatgcctttttcccgttttaccag

Basic information

species Glycine max
transcript GLYMA16G22910.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198079|gb|HO039618.1|HO039618
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|151407653|gb|EV277468.1|EV277468
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|213590342|gb|DB963877.1|DB963877
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|15000576|gb|BI321390.1|BI321390
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|151405142|gb|EV274956.1|EV274956
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|298194598|gb|HO043070.1|HO043070
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
EST: gi|298168986|gb|HO020290.1|HO020290
EST:     TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA                         GTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC
genomic: TTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAAgtaacactcg ... gttttaccagGTCAGGTACTTTCAACTATGATGACAAATATAAAGGAGCTACTGCTAAATC