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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccaatctctcaatcattgcattcatagcataattaccatttcccatttgcacacagcttattctctactaattttactttgtacttcggttctaacgctgttttgcttcacgttgttgttatcacacgacatgtttgtgaaaatgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA

Basic information

species Glycine max
transcript GLYMA16G22910.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198079|gb|HO039618.1|HO039618
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|151407653|gb|EV277468.1|EV277468
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|213590342|gb|DB963877.1|DB963877
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|15000576|gb|BI321390.1|BI321390
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|151405142|gb|EV274956.1|EV274956
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|298194598|gb|HO043070.1|HO043070
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
EST: gi|298168986|gb|HO020290.1|HO020290
EST:     CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTG                         AGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT
genomic: CACAGCTGCTGGCTACGGATACATAAAATCGTTCCCAGATTCAAAACCTGgtactccaat ... tgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttgcttcacgttgttgttatcacacgacatgtttgtgaaaatgcttaacagAGATGCTTTTCTTGAGCTGGGGTCGCCCCTCTCCCCAAGACCAAAAGACTTGCATCAACAA
                 ttgttat  TA-rich tract