1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taacctctttcctaagctaacattaccaatttatcatgagatatcaactaatgtgagcttagtaaactttttttttatcttcaattatactttgtttcagGTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGACCGACACAAAGCTCATGCTGGATATACAAATCTCGAGCTGAAAATATTTT
species | Glycine max |
transcript | GLYMA16G21970.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGTANNNCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAG GTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGACEST: gi|11274596|gb|BF324937.1|BF324937
genomic: TGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAGgtaaatacat ... tttgtttcagGTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGAC
EST: TGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAG GTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGAC
genomic: TGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAGgtaaatacat ... tttgtttcagGTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGAC
aactaatgtgagcttagtaaactttttttttatcttcaattatactttgtttcagGTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGACCGACACAAAGCTCATGCTGGATATACAAATCTCGAGCTGAAAATATTTT
aactaat putative branch site (score: 2)
ctttgtttc putative PPT
ttagtaaacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacctctttcctaagctaacattaccaatttatcatgagatatcaactaatgtgagcttagtaaactttttttttatcttcaattatactttgtttcagGTTGCCAAAGTACATAGTCAGTTTGTTGAAGCACTTCAAGATCTTTTCGACCGACACAAAGCTCATGCTGGATATACAAATCTCGAGCTGAAAATATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - -tcatgag