1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcggggaacagatcttaaacaagttagtactatttgttgtcaatgacaagaaaagaactatatttgttcataacctagaatgttcaactcttgccttcagATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAG
species | Glycine max |
transcript | GLYMA16G21970.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG ATCTCCTATACCATTCAAAAATCCATTGTATNNNNTCGTGGGTANNNCAATEST: gi|11274596|gb|BF324937.1|BF324937
genomic: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGGgtgcgtgtct ... ttgccttcagATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAAT
EST: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG ATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAATEST: gi|151406589|gb|EV276404.1|EV276404
genomic: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGGgtgcgtgtct ... ttgccttcagATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAAT
EST: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG ATCTCCTATACCATTC
genomic: CTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGGgtgcgtgtct ... ttgccttcagATCTCCTATACCATTC
acaagaaaagaactatatttgttcataacctagaatgttcaactcttgccttcagATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAG
tcataac putative branch site (score: 2)
ctcttgccttc putative PPT
aaaagaactatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcggggaacagatcttaaacaagttagtactatttgttgtcaatgacaagaaaagaactatatttgttcataacctagaatgttcaactcttgccttcagATCTCCTATACCATTCAAAAATCCATTGTATATCGTCGTGGGTAGACCAATTGAGCTAGAGAAAAATCCAGAACCAACAATGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
gcgggga
- - - - - - - -taaacaag
- - - - - - - - - - - - - - - - - - - - caatgac
- - - - - - - - - - - - - - - - - - - - - - - -aagaaaa