Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCCTTTCTTAAGCAAAGAAGAGGATTTGTCCGCATAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAGgtatttcttgagcagagctgtattctttaattttcttttatttaattataccatgtatatatccaacttgcaatcgttgctggcttaaaatatcagcttc...

Basic information

species Glycine max
transcript GLYMA16G21970.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0044g01940.t01 (Vitis vinifera), 5'ss of exon 6
ATTGCCTTTCTTAAGCAAAGAAGAGGATTTGTCCGCATAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAGgtatttcttgagcagagctgtattctttaattttcttttatttaattataccatgtatatatccaacttgcaatcgttgctggcttaaaat-atcagcttc--
 ||||||| || |||  ||||| ||||||||| ||||||||  || | ||||| |  ||| | |||||||||||||||||||| ||||||||| ||        |   |    ||  |   | | |   ||     ||   || ||     |  || || | ||  ||   ||| | |  | |  |||  
GTTGCCTTCCTCAAGTCAAGAAAAGGATTTGTTCGCATAGCCATGGAGATGGGACGGCCCTTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttgttttcttccccaccaggtatt--tggccatctgcatagccg-actgggtctagcctgatttttcagttgtgtctattttacatttgttaatttcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933361|gb|BU550500.1|BU550500
EST:     TTTCTGCTTTGGCCAG                         ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
genomic: TTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
EST: gi|11274596|gb|BF324937.1|BF324937
EST:     TTTCTGCTTTGGCCAG                         ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
genomic: TTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
EST: gi|151406589|gb|EV276404.1|EV276404
EST:     TAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAG                         ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAG-TTAATGCAAAATCTT
genomic: TAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT