1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtattattttcctatctgctaatgttgctaatttatgtttgtgattttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG
species | Glycine max |
transcript | GLYMA16G21960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTEST: gi|20497895|gb|BQ272825.1|BQ272825
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: GGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTEST: gi|298194793|gb|HO043265.1|HO043265
genomic: GGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTEST: gi|7639233|gb|AW733560.1|AW733560
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
tttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG
ttttgct CT-rich tract
tattcaatcaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattttcctatctgctaatgttgctaatttatgtttgtgattttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG
- - - - - - - tctgcta
- - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcaa