1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaaaggtttccaaataaaatgggtcttatgatatgaaactgctttaatttgatctatattcatacaggttaacaatattaagaattatttgctttctagATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG
species | Glycine max |
transcript | GLYMA16G21960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATACCTGGTGGAGTGCAAGAAGCATTTCTCATTGAGCATGGTTCTGAG ATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAGEST: gi|7639233|gb|AW733560.1|AW733560
genomic: TGATACCTGGTGGAGTGCAAGAAGCATTTCTCATTGAGCATGGTTCTGAGgtacattgct ... tgctttctagATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAG
EST: TCTCATTGAGCATGGTTCTGAG ATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAG
genomic: TCTCATTGAGCATGGTTCTGAGgtacattgct ... tgctttctagATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAG
taatttgatctatattcatacaggttaacaatattaagaattatttgctttctagATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG
ggttaac putative branch site (score: 3)
tttgctttct putative PPT
ttaacaatattaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaaggtttccaaataaaatgggtcttatgatatgaaactgctttaatttgatctatattcatacaggttaacaatattaagaattatttgctttctagATTGCCTTTCTTAAATCAAGGAGAGGATTTGTCCGCATAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - aaataaa
- - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - actgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcataca