Sequence
atgc intronic sequence ATGC exonic sequence...aacaaaattcggtcttttattagagaccttaaacatatttaagccaaatttaattgttagtagttcatgaaaattaacaacagtatgtcttttcgtgcagTTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAG
Basic information
species | Glycine max |
transcript | GLYMA16G21960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21960.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G51520.1 (Arabidopsis thaliana), 3'ss of exon 2
----aacaaaattcggtcttttattagagaccttaaacatatttaagccaaatttaattgttagtagttcatgaaaattaacaacagtatgtcttttcgtgcagTTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAG
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gttagtcacaatctccttcttactccaaagtatcaaac---tttaagatgggtttg-----tgata--tcgttgacttttttaac-------ttgtgattacagTCTTTGGTTATGAACCACATTCGGTGCTACCGATTGGAGTTGTTGCTCTTTGTGATCTCACAGGGTTTATGCCTATTCCTAACATTAAAGTTCTTGCAAG
upper sequence: GLYMA16G21960.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0044g01940.t01 (Vitis vinifera), 3'ss of exon 3
-------aacaaaattcggtcttttattagagaccttaaacatatttaagccaaatttaattgttagtagttcatgaaaattaacaacagtatgtcttttcgtgcagTTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAG
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ggtttcttagacagctttgacctcatttaggaact---ggcttctattagtttattt---ctctttgttatgcataagtaatgataatagtgtatgctt-cttgcagTATTTGGTTATGAGCCACATTCAGTTCTGCCAATTGGTGTTGTTGCACTTGCTGACCTTACAGGTTTCCTGCCTCTCTCAAAAATTAAAGTCCTTGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11274206|gb|BF324574.1|BF324574EST: ACGCTTCATGTGGAGGATATGAAGGCTTTTCATCCCAGTCGTGCTTATG TTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAG
genomic: ACGCTTCATGTGGAGGATATGAAGGCTTTTCATCCCAGTCGTGCTTATGgtgtgtccca ... tttcgtgcagTTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatttaattgttagtagttcatgaaaattaacaacagtatgtcttttcgtgcagTTTTTGGTTATGAACCACATTCAGTTTTGCCAATTGGAGTTGTTGCATTAGCTGACAACACATGTTTTATGCCTCTTCCTAAAATAAAAGTTCTTGCTAG
aattaac putative branch site (score: 2)
tgtcttttc putative PPT
ttcatgaaaattaa TA-rich tract