Sequence
atgc intronic sequence ATGC exonic sequenceGTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATgtaagttggttaatcctcaaacattttgtcaaagaaaagttgggtcctttggccaacaatataattcctattaaactggttgtag
Basic information
species | Glycine max |
transcript | GLYMA16G21590.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01700.t01 (Vitis vinifera), 5'ss of exon 6
GTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATgtaagttggttaatcctcaaacatt-ttgtcaaagaaaagttgggt--cctttggccaacaatataattcctattaaac-tggttgtag
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ATATGTGGAGAACATGTTAAGGTTGGAGGGTGGTGCAATTCGAGAACTTGTTGGGAACATGATGCTTGTGGCACTGATGGACAGGCTGGTAGACTTGGATgtaagt------aatttcacatattcttacgaaatcatggttgaaaagcacttatttatctttgtattttctttttgatattcttatag
upper sequence: GLYMA16G21590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01800.t01 (Vitis vinifera), 5'ss of exon 3
GTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATgtaagttggttaatcctcaaacattttgtcaaagaaaagttgggt--cctttggccaacaatataattc-ctattaaactggttgtag
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ACATGTGGAGAACATGTTAAGGTTGGAGAGTGGTGCAATTCAAGAACTTGTTGGGAAAATGATGCTTGTGGCAATGATGGATAGGCTGGTAGACTTGGATgtaagt-----aatttcacattttcttgtgaaattatggttgaaaagcacttatttttctttgtattttgtttttgagattcttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254333248|gb|GR850498.1|GR850498EST: TCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGAT GTGGAAATTGGATGGGATGGAATCCTGCAAGAAGATGCCAAAGGCATATTT
genomic: TCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATgtaagttggt ... ctggttgtagGTGGAAATTGGATGGGATGGAATCCTGCAAGAAGATGCCAAAGGCATATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGTCGAGAATATGTTAAGGCTGGAGAGTGGTGCAATTGGAGAAACTGTCGGTTCTATAATGCTGCCTGCTCTTGTGGATAGGTTGCTAGAGTTGGATgtaagttggttaatcctcaaacattttgtcaaagaaaagttgggtcctttggccaacaatataattcctattaaactggttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC