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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgttattcaactaaatttgtttgatttgacattaacattttattgaattaaattttatgcttatgttgctttttgttcaccacaacaactctcaatgtggactgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGATGATGACAATGACGAACTCAGTGATAGTGGCAGTGAAGTATCAGAT

Basic information

species Glycine max
transcript GLYMA16G21590.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021704|gb|CX708445.1|CX708445
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|193307271|gb|FK272441.1|FK272441
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|254328246|gb|GR835211.1|GR835211
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|208140828|gb|GD935226.1|GD935226
EST:     TGACATTGTTTTTCCCTATTTGATCCATGTTTGTTGAAG-AAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: TGACA-TGTTTTTCCC-ATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|14991324|gb|BI316997.1|BI316997
EST:     CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: gi|58021598|gb|CX708339.1|CX708339
EST:     CTGGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG                         CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttatgttgctttttgttcaccacaacaactctcaatgtggactgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGATGATGATGACAATGACGAACTCAGTGATAGTGGCAGTGAAGTATCAGAT
                                             ctgtcttc  CT-rich tract
             tttttgtt  TA-rich tract