1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...catttgatgggtgaagactgtttgaactttttctattacaacgttgtgctgcttttgtctgaaacaaatacttggagattgatgtaaacttttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGT
species | Glycine max |
transcript | GLYMA16G21590.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCTACTGTAGTAGTGGAAEST: gi|14991324|gb|BI316997.1|BI316997
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAA
EST: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTEST: gi|10843968|gb|BF070884.1|BF070884
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
gtgctgcttttgtctgaaacaaatacttggagattgatgtaaacttttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGT
gattgat putative branch site (score: 4)
cttttctacc putative PPT
aaacaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttgatgggtgaagactgtttgaactttttctattacaacgttgtgctgcttttgtctgaaacaaatacttggagattgatgtaaacttttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGT
- - - -tgggtga
- - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - tgtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgta