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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCGAAACTTCTCATGGAATCGCAAACGGATCTGCAGAACCGACCCGGAATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctctctcgcttattctctctaagctttaattttaggttgtatcttataactcttgtaaaattaattctttggtatgctgtttagattccggaattatttattcagtgctggaactggaatttgatttggctgatgttgagtgtag

Basic information

species Glycine max
transcript GLYMA16G21560.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297628|gb|FG989921.1|FG989921
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCGAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
EST: gi|192333176|gb|FK026505.1|FK026505
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
EST: gi|193720153|gb|FK654415.1|FK654415
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGA
EST: gi|151405714|gb|EV275528.1|EV275528
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
EST: gi|298189562|gb|HO037965.1|HO037965
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGGCCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
EST: gi|151409293|gb|EV279101.1|EV279101
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
EST: gi|209728151|gb|BW655386.1|BW655386
EST:     AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCC                         GATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA
genomic: AATCTTCATTATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCgtaactctct ... ttgagtgtagGATTGACCTCTGTTGATGTTGATGATGCTTTTGATTCGGCTTCTCAAGTGA