1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCGAACTAAATATGATTTGATTGCTAATGTTGTTCATGATGGCAAACCTGGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATGgtaagttctaattctttgtaagataaaaaaaaaaatgcatcaatctgaatggatgtatggatgtttaacaatgatgagggctaataccttgtttttttag
species | Glycine max |
transcript | GLYMA13G22190.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATG GTACGAGATGTAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGCEST: gi|58022217|gb|CX708958.1|CX708958
genomic: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATGgtaagttcta ... gtttttttagGTACGAGATGCAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGC
EST: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATG GTACGAGATGCAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGCEST: gi|151408411|gb|EV278219.1|EV278219
genomic: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATGgtaagttcta ... gtttttttagGTACGAGATGCAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGC
EST: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATG GTACGAGATGCAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGC
genomic: GGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATGgtaagttcta ... gtttttttagGTACGAGATGCAGGATTTGCACGTCTCTGAAACACTTCCTCATTTGGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGAACTAAATATGATTTGATTGCTAATGTTGTTCATGATGGCAAACCTGGTGAAGGATTCTATAGGGTATTTGTGCAACGCAAATCAGAAGAACTATGgtaagttctaattctttgtaagataaaaaaaaaaatgcatcaatctgaatggatgtatggatgtttaacaatgatgagggctaataccttgtttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC