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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgttggtctattgttttttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct...

Basic information

species Glycine max
transcript GLYMA13G22190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgt--tggtctattgttttttaactttttttaatttggctgtgcttgctgc-agacaattttttagcaacatatttctgtttctatggtcatcagccattggct
| |  || || || |  ||||| ||||  ||||||||||||||||| ||||| || |||||||| ||||| || || |||||| ||||  | || |||||||  |  ||||| ||     |  ||   |  | |    || |||    || |  || ||||||      ||   | || ||     |                
TGTTCATTAACCTTCAAACTGAGAAAGCTTACTGTCTTCCTGATGGATATGAGATAAATGATCCATCATTGGAAGATATTCGACATGTTCTCAACCCAAGgtgcttttctatcgtcgcccatgttaactctagtaa--tgagctcagagctatgcagttttttg-----attggtgtgctttggcag----------------

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgttggtctattgttttttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct
| |  || ||||| |  ||||| || |  ||||||||||||||||| ||||| ||||||||||| || ||||| || |||||| ||||  | ||||||||||   ||| |  ||  ||      ||  | ||     |  |||| ||          ||| |||||| |      |   ||  ||  |   |     |  
TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttct-tcattgcttctaacattacatttcaatagcacttgatgg--------ctttggcaacacaggctgctaattagtgtactgttctggcag--

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22350.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgttggtctattgtttt--ttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || |||||||||||  |||| ||||| |||||||   |    | || |   |||||   |   | ||     ||| |  ||   |    ||| |    |  |    || |     | || | || | |      
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgactaactacatcatagttcttactgcattttgggtattgatttgtgaacatgtgagcctttgcacgtagttaacaacaacaaa--

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22410.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgttggtctattgtttt--ttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || |||||||||||  |||| ||||| |||||||   |    | || |   |||||   |   | ||     ||| |  ||   |    ||| |    |  |    || |     | || |  | | |      
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgactaactacatcatagttcttactgcattttgggtattgatttgtgaacatgtgagcctttgcacgtagttaaaaacaacaaa--

upper sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G22285.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgt-tggtctattgttttttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct
| || |||||||| |  || || || || || |||||||||||| |||| || || ||||| ||||| || |||||||||||  |||| ||||| ||||||| |  |  ||  | |    |||  ||   | ||     ||| |  ||   |    ||| |    |  |    || |     | || | || | |      
TTTACATCAATCTTCTGACAGAGAAGGTTTATTGTCTTCCTGATAGTTACGAGATCAATGACCCTTCTTTGGATGACATTCGCCATGTTTTAAACCCAAGgtatattagatcttgtgactactacttcatagttcttactgcattttgtgtattgatttgtgaacatgtgagcctttgcacgtagttaacaacaacaaaa-