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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttcatgcttatagaaatgaaatttcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTTCTTATCCCTGAAA

Basic information

species Glycine max
transcript GLYMA13G22190.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G22190.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 3'ss of exon 3
----gtatatttttcat---gcttatagaaatgaaatt---tcgatttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTTCTTATCCCTGAAA
    | | ||||   ||    | |  | |  || ||||   ||   |||    ||| |               | |       | |  |   |||| ||||| || || || || ||||||||||| |||||||||||||| ||||| || || ||||||||| |||| || || || ||||| ||||| ||||||||||
cattgcagatttcctattgcacctcaatatttgcaattctctctgctttgaccattattatcctatggcagtagtcacttctctatgcttaaatttgcagGTTGGTCTAAACAACATCAAGGAGACAGATTTTGTGAATGTCACAATACAGTCATTAATGAGAATTACTCCTTTAAGAAATTTCTTTCTCATCCCTGAAA

upper sequence: GLYMA13G22190.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G091151_T01 (Zea mays), 3'ss of exon 3
-----------gtatatttttcatgcttatagaaatgaaatttcgattt-ttgatattttggaaaggctattaggggcctacaattgtattgtgattttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTTCTTATCCCTGAAA
            |||| ||||  | |  || | ||| |  | |   | | |||||  |||        | |       ||| |||||   ||   | | |||||||| ||||| || |||||||||||||||||||||||||| ||||| || || |||||||||||||| ||  |||| ||||| ||||| ||||||||||
taatctcaaaaatatacttttattacacatggtaattaggtctttttctattgatgctttattgcctttttatctcatctataattgc--tgctttgtgcagGTGGGTCTTAACAACATCAAGGAGACTGATTTTGTGAATGTCACAATACAGTCATTAATGAGAGTTACACCTCTGAGAAATTTCTTTCTAATCCCTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgatattttggaaaggctattaggggcctacaattgtattgtgattttcagGTGGGACTTAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAATCCTTAATGAGAGTTACCCCCTTGAGGAATTTTTTTCTTATCCCTGAAA
 ttttgat  putative branch site (score: 4)
                                                ttttc  putative PPT
                                   aattgtatt  TA-rich tract